Well, we have some forward progress again...
New OEM cast Water pump is installed, and I have started getting the wiring and engine bay a little better. I had "universal" plug wires which means they fit nothing properly lol. So I got a set of msd ends and cut them down a ton to fit better and installed a set of sparks plug organizers. Getting the wiring into loom and starting to figure out the routing for now. I'm not getting super OCD yet, as I'm planning to take this car back apart for paint and body work once we move to a new house for law school in a few months. Got heater core lines on and will get the clip on them soon that anchors them to the wheel well. I changed the air cleaner setup to a drop base and ran a hard bend line to get the fuel inlet to clear the new base. Now I can run a normal air filter instead of the tiny one I had on there that was getting crushed by the hood. This one is a 3 but I think I'll run a 2 inch and get a tiny bit more space as it still is really close to hitting. Still not happy yet with how this bay looks, as it still is a hot mess, but its a work in progress.